PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000198235
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 148aa    MW: 16592.1 Da    PI: 8.2043
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000198235genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.77.5e-39251422117
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                    +pGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd++v+s+  
  MDP0000198235  25 QPGFRFHPTDEELITFYLASKVYNGSFCG-VRIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGMRTNRATGAGYWKATGKDRQVFSAst 119
                    69************************777.45***************8888899**************************************9987 PP

            NAM  96 kgelvglkktLvfy.kgrapkge 117
                    +g l g+kk  ++  +grap+++
  MDP0000198235 120 GGXLLGMKKXXALVlQGRAPRAT 142
                    8889*****87776578999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4221141IPR003441NAC domain
PROSITE profilePS5100540.57224148IPR003441NAC domain
PfamPF023651.5E-1726130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MLGIGMEEIM SELMSGEDEN GQGFQPGFRF HPTDEELITF YLASKVYNGS FCGVRIAEVD  60
LNRCEPWELP DVAKMGEREW YFFSLRDRKY PTGMRTNRAT GAGYWKATGK DRQVFSASTG  120
GXLLGMKKXX ALVLQGRAPR ATRPSGHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-362614319132NO APICAL MERISTEM PROTEIN
1ut4_B4e-362614319132NO APICAL MERISTEM PROTEIN
1ut7_A4e-362614319132NO APICAL MERISTEM PROTEIN
1ut7_B4e-362614319132NO APICAL MERISTEM PROTEIN
3swm_A3e-362614322135NAC domain-containing protein 19
3swm_B3e-362614322135NAC domain-containing protein 19
3swm_C3e-362614322135NAC domain-containing protein 19
3swm_D3e-362614322135NAC domain-containing protein 19
3swp_A3e-362614322135NAC domain-containing protein 19
3swp_B3e-362614322135NAC domain-containing protein 19
3swp_C3e-362614322135NAC domain-containing protein 19
3swp_D3e-362614322135NAC domain-containing protein 19
4dul_A4e-362614319132NAC domain-containing protein 19
4dul_B4e-362614319132NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981210.0KF198121.1 Malus hupehensis NAC domain protein (NAC80) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346452.17e-91PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_008373384.12e-89PREDICTED: protein BEARSKIN1
SwissprotQ9S8514e-66NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLS5RSI91e-105S5RSI9_9R
STRINGPOPTR_0002s00730.12e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-67NAC family protein